Changes

3.5.0 (2022-12-07)

Features:

• Added ability to specify grid rows and columns in url (#853)

• Allow pasting channel group to current selected slide (#857)

• Pre-define, copy and paste ROI styles (#809, #829)

• Performance improvements for label image queries (#844, #865, #879)

Bugfixes/Maintenance:

• Improved annotation chooser UI (#860)

• Fix grid to figure export position and channel settings (#869)

• Build and release maintenance (#871, #872, #874, #884)

3.4.1 (2022-08-02)

Bugfixes/Maintenance:

• Fix un-starring annotations (#838)

• Avoid display artifacts when flipping image (#845)

• Handle images owned by root user (#846)

• Fix image name label in Figure export (#847)

• Fix label image UI (#840, #849, #852)

• Support file annotations on ROIs (#841)

• Build and release maintenance (#851)

3.4.0 (2022-07-11)

Features:

• Multi-user channel groups, ROI sorts, label image queries (#742, #818)

• Command line tool to manage label image queries (#806)

• Customizable branding (#788, #804)

• Added open in PathViewer button to plugin (#795)

• Add white color to color picker (#798)

• Copy links to selected rois (#811)

• Allow zoom to native magnification (#822)

• UI improvements (#807, #808, #824)

Bugfixes/Maintenance:

• Build and release maintenance (#775, #793, #826)

• Pin overview image rotation to 90 degree angles (#802)

• Provide correct login URL (#803)

• Fix channel controls for floating point images (#821, #833)

• Better label image table support (#832)

3.3.6 (2022-05-26)

Bugfixes/Maintenance:

• Update omero-figure version requirement (#810)

• Build and release maintenance (#813)

3.3.5 (2022-04-08)

Bugfixes/Maintenance:

• Support latest versions of OMERO.web (#780)

• Fix shape copying (#781, #796)

• Improve documentation (#794)

• Support blind annotation in multi-group context (#790)

• Fix ellipse shape editing (#799)

• Build and release maintenance (#800)

3.3.4 (2022-01-12)

Features:

• Channel legends improvements; new pixel value picker (#766)

Bugfixes/Maintenance:

• Fix zoom level count for label images (#769)

• Always use higher resolution tiles (#770)

• Fix format string in pyramid detection error handler (#771)

• Avoid using rendering engine (#773)

• Improve keepalive functionality (#776)

• Fix repeated tags (#777)

• Build and release maintenance (#778)

3.3.3 (2021-11-15)

Features:

• Block UI if keepalive fails (#747)

• Image map annotations (#749)

• Add configuration option for secondary viewer (#761)

• Increase maximum grid size (#762)

• Full screen toolbar button in grid (#767)

Bugfixes/Maintenance:

• Hide image names in grid when blind mode is active (#751)

• Label image fixes (#752)

• Fix blind mode right panel (#753)

• Hide image dropdown select caret in grid when disabled (sync mode on) (#763)

• Optimize slides list performance (#758)

• Improve “Open in grid” (#759)

• Draw predefined shape on mouse up (#764)

• Build and release maintenance (#765, #768)

3.3.2 (2021-10-21)

Bugfixes/Maintenance:

• General improvements (#725, #732, #743, #748)

• Fix saving ROI with multiple shapes (#738)

• Fix export script (#757)

• Build and release maintenance (#723, #760)

3.3.1 (2021-09-30)

Bugfixes/Maintenance:

• Fix left-hand panel performance (#754)

• Fix export script capabilities detection (#755)

• Build and release maintenance (#756)

3.3.0 (2021-09-16)

Features:

• Arrows for line shapes (#652)

• Label image support (#658, #683, #701, #706)

• Support shape dashed strokes (#659)

• Add label shapes (#673)

• Better user notification about clipboard access on Firefox (#678)

• ROI label position and font color (#679)

• Dataset selection when saving grid view (#680)

• Add markdown help to description editor (#681)

• Add new blind annotation flag to duplicate owner annotations (#682)

• Load, display and store C/Z/T of shapes (no editing) (#687)

• ROI display order (#688)

• Zoomable barcode and overview images with ROI display (#692, #707, #716)

• Copy channel when dragging and any modifier key is down (#669, #693)

• Add available measurements to ROI defaults tab (#694)

• OMERO.script for ROI to Shape label name copy (#695)

• Greyscale channel cycling (#698)

• Show pixel intensity (#699)

• Rescale channel sliders (#700)

• Add new config settings for UI options (#709, #712)

• Bump maximum active channel default to 10 (#710)

• Gamma control (#717, #740)

• Open channels in grid (#724)

• Script support for plugins (#726, #731)

• Copy display settings (#727)

• Simplified installation (#745)

Bugfixes/Maintenance:

• Handle zooming to native resolution for untiled images (#665)

• Reduce chance of ROI load and image switch interfering (#666)

• Fix store tabs in URL (#667)

• Refactor channel group loading (#668)

• If grid images have physical pixel size set, use for resolution sync (#670)

• Fix element toggle when initially hidden (#672)

• Fix grid paste position (#676)

• Don’t add extra slots when loading grid view (#677)

• Fix compressed tiles checkbox (#684)

• Show microservice version number if available (#686)

• Fix ROI defaults bugs (#689)

• Don’t click on tab if it’s already selected to avoid side effects (#690)

• Keep magnification popup open while input box has focus (#691)

• ROI/shape annotation fixes (#696)

• Fix SVG issue in Safari with hidden channel indicator (#703)

• Fix invalid channel count issue (#704)

• Remove ‘load while interacting’ option (#711)

• Fix hide label feature (#714)

• Set minimum viewer width and disable excessive UI scaling (#715)

• Fix external info saving (#719)

• UI fixes (#720, #721, #730)

• Fix image map annotation (#728)

• Document channel group annotation (#729)

• Apply rendering settings (#733)

• Improve channel settings UI (#735)

• Updated documentation (#675, #736)

• Build and release maintenance (#660, #661, #662, #663, #664, #671, #674, #685, #705, #708, #718, #722, #734, #746)

3.2.0 (2020-09-30)

Features:

• Make channel toolbar limit configurable and set default to 8 (#654)

• Add description field to ROI defaults (#647)

• Add checkbox to map annotation values to quickly set true/false values (#568)

• Grid: paste to all (#569, #642)

• Channel group command line tools (#570)

• Add hook for custom ROI actions (#577, #646, #655)

• More ROI defaults (#580, $647)

• Normalize rectangle measurements to minimize rotation (#592)

• Use auto-growing textareas for map annotation inputs (#594)

• User experience improvements (#598)

• Better indicate freehand shape selection (#599)

• Blind annotation (#600, #640, #644)

• Show message on tile loading error (#601)

• Predefined shapes support (#602)

• Warn users when grid has unsaved changes (#603)

• Only disable grid buttons when viewer data is loading (#605)

• Add button to reset ROI defaults (#607)

• Allow measurement editing of rectangle width and height (#610)

• Allow panning and rotating of image while in drawing mode (#613)

• ROI navigation buttons (#615)

• Grid paging improvements (#618)

• New ROI/shape label functionality (#624, #657)

• Toggle selected ROIs (#628)

• Make keepalive interval configurable (#632)

• Load file paths for use in other apps (#634)

• More flexible annotation values pasting (#635)

• Zoom and pan to ROI on load (#637)

Bugfixes/Maintenance:

• Fix description control (#648)

• Fix channel label if not set (#656)

• Fix grid toolbar (#566)

• Fix overview map click (#572)

• Fix rotation buttons (#573)

• Update color picker and keep quick color buttons at fixed size for now (#574)

• Fix zoom to roi (#575)

• Fix drag/pan and mousewheel-zoom interactions (#576)

• Fix drawing toolbar styling to indicate active mode when not focused (#578)

• Use local channel settings for channel toolbar (#579)

• Fix fonts (#581)

• Fix zoom to ellipses feature (#582)

• Fix annotation sorting (#583)

• Fix ROI label editing in ROI list (#584)

• Fix image flipping (#585)

• Make sure birds eye rotation is correct after resetting overview map (#586)

• Fix layer removal (#590)

• Fix projection when loading flipped image (#591)

• Fix grid view dialog layout (#593)

• Fix grid bar elements (#595)

• Fix styling (#609)

• Fix namespace for saved channel group settings (#620)

• Fix grid paste-to-all (#625)

• Fix keyboard pan (#626)

• Fix hyperlink in docs (#627)

• Fix format of channel settings for export (#629)

• Fix active channel tools (#630)

• Max channel count fixes (#631)

• Fix grid sync (#633)

• Fix image switching in grid (#641)

• Add button classes to grid view dialog (#643)

• Restore correct settings when aborting slide switch (#645)

• Make sure zoomLevelScaling is set; if not ignore levels (#649)

• Build and release maintenance (#562, #567, #588, #596, #597, #604, #611, #616, #617, #638, #639, #650, #651, #653)

3.1.1 (2020-04-10)

Bugfixes/Maintenance:

• Python 3 support (#563, #564)

• Build and release maintenance (#565, #571)

3.1.0 (2020-04-02)

Features:

• New grid features (#514, #544, #548)

• Limit number of active channels (#543)

• Better slide tag filtering (#519)

Bugfixes/Maintenance:

• Fix URL format (#546, #547)

• Fix channel settings bug (#549, #550)

• Fix grid paging (#551)

• Fix erroneous channel sliders (#552)

• Refactor URL provider (#542)

• Fix slide thumb loading for large datasets (#541)

• Overview indicator on dark images (#537)

• Build and release maintenance (#533, #538, #539, #545, #553, #554, #555, #556, #557, #558, #559, #560, #561)

3.0.4 (2019-11-27)

Bugfixes:

• Simplify rectangle transforms (#515)

• Fix birds eye view (#516)

• Keep images list when switching slides (#518)

• Don’t wait indefinitely for export (#517)

• Fix menu handler (#534)

• Python3 compatibility (#535)

• Update omero-figure version requirement (#536)

• Build and release maintenance (#529, #530, #532)

3.0.3 (2019-09-13)

Bugfixes:

• Fix missing script file (#512)

• Fix export format bug (#513)

3.0.2 (2019-09-13)

Bugfixes:

• Fix tile size issues (#507, #510)

• Fix issue with old version of pdftoppm (#508)

• Build and release maintenance (#504, #505, #506, #511)

3.0.1 (2019-07-03)

Features:

• Documentation updates (#500, #501)

• Build and release maintenance (#503)

Bugfixes:

• Fix minimap runtime issue (#502)

3.0.0 (2019-06-20)

Features:

• Performance improvements (#448, #453, #454, #455, #466, #467, #478)

• Customizable logo (#445)

• Flip image (#439)

• Add build date to help screen (#437)

• Optional kinetic drag (#430)

• Mouse wheel zoom improvements (#395, #406)

• Mouse panning mode (#476)

• Allow right-click menu to open multiple images in PathViewer (#380)

• Improved URL state handling (#358, #428)

• Bird’s eye view improvements (#356, #474)

• Mask features (#386, #425, #436)

• Improve RGB image behavior (#384, #403, #410)

• Slide sorting and filtering (#364, #426, #473)

• Display slide tags (#471, #480, #484)

• Display channel names (#486)

• UI improvements (#357, #368, #369, #377, #379, #389, #398, #400, #404, #415, #431, #477, #483, #488, #489, #496, #497)

• z/t index sliders (#492)

• UI customization hooks (#462)

• Custom magnification level (#451)

• Better keyboard support (#461, #468, #472)

• Macro and label image improvements (#354, #363, #376, #382, #416)

• Improved drawing (#370, #373, #378, #388, #394, #397, #409, #417, #419, #422, #432, #433, #491)

• Improved color picker (#495)

• Freehand polylines and polygons (#450)

• View Export (#391, #392, #393, #396, #399, #427, #438, #460, #470, #475, #481, #490, #494)

• PathViewer Grid (#345, #355, #365, #366, #371, #372, #374, #375, #385, #390, #408, #411, #412, #414, #418, #440, #449, #452, #457, #458, #459, #464, #465, #485, #487)

• Switch rendering library to OpenLayers (#345, #367, #381, #383, #434)

• Build and release maintenance (#387, #441, #443, #479)

• Documentation updates (#498)

• Docker build (#463)

Bugfixes:

• Fix initial z/t index (#482)

• Fix fullscreen button (#456)

• Fix annotation undo/redo (#447)

• Add missing thumbnails batch size setting (#446)

• Fix keyboard control related issues (#423)

• Remove any side effects from using Color singleton for color processing (#424)

• Don’t reload slides when saving ROIs (#405)

• Properly handle selection change after pasting (or in other situations) (#420)

• Ignore hidden ROIs when selecting all (#413)

• Unload channel before creating annotation link (#401)

• Improved barcode/overview image detection (#493)

2.1.2 (2019-06-20)

Features:

• Customizable logo (#444)

• Release maintenance (#442)

• Style buttons (#361)

• Add PathViewer to Open With menu (#349)

• Hide masks on load (#347)

• Build and release maintenance (#499)

Bugfixes:

• Move querystring contents to hash on redirect to keep base URL constant (2.1.x) (#429)

• Load overview and barcode image even if they are not in available slides (#362)

• Fix transition layering (#360)

• Bump omero-marshal dependency (#353)

• Improved dataset slide handling (#352)

• Use configured batch size when loading thumbnails (#351)

• Load thumbnails all at once (#350)

• Tipr library is no longer available on github (#348)

2.1.1 (2018-01-24)

Bugfixes:

• Fix channel management interface in read-only situations (#343, #344)

• Fix word breaks in annotation descriptions (#341)

• Fix channel label load and save (#340)

• Fix empty values in read-only annotations (#339)

2.1.0 (2017-11-28)

Features:

• Improve channel group adding behavior (#310)

• Improve ROI list display (#309)

• Update documentation (#305, #338)

• Tooltips (#300)

• Allow selection and copying of ROI identifier (#297)

• Add ROI and object links to descriptions (#295)

• Hide unneeded ROI properties (#294)

• Larger preview and more granular rotation (#293)

• Improve tool icons (#292)

• Rendering settings reload feature (#290)

• New rotation controls (#289)

• Batch edit ROI annotations (#284)

• Improve channel manager UI (#283, #316, #331)

• Sort ROIs and navigate ROIs using keyboard (#281)

• Remain in drawing mode after saving (#280)

• Improve color picker UI (#277)

• Add uncompressed tile support (#276, #286)

• Always show magnification menu (#274)

• Improve channel manager (#272, #315, #324, #334)

• Add markdown-formatted descriptions (#271, #296, #313, #318, #320, #325)

• Add mask ROI support (#268, #307, #337)

• Upgrade third-party libraries and reorganize code (#269, #270, #323)

Bugfixes:

• Sync image description in slides list (#336)

• Sync ROI name across tabs (#335)

• Fix drawing toolbar tooltips (#333)

• Fix color picker positioning (#332)

• Fix mouse cursor while dragging (#330)

• Fix color picker button behavior (#327)

• Fix look and feel of badges (#322)

• Fix channel filter nub (#321)

• Force text cursor on inline editing elements (#319)

• Hide Pixels Size entry if not available (#317)

• Fix channel max range input position (#314)

• Fix channel swatch position when dragging after scroll (#311)

• Remove line snapping (#308)

• Fix viewer selection (#306)

• Fix ellipse selection after creation (#304)

• UI visual improvements (#303)

• Fix UI element alignment (#299, #301)

• Fix image description saving (#298)

• Fix mouse cursors (#287, #302)

• Fix build issue (#285)

• Fix tile gaps (#282)

• Hide colorpicker on tool change (#279)

• Drawing toolbar fixes (#278)

• Fix copy/paste when nothing selected/clipboard empty (#275)

• Fix display of duplicate tiles (#273)

2.0.0 (2017-08-07)

Features:

• Update documentation (#251, #252, #253)

• Allow underzoom for images that don’t fit in window (#248)

• Generate licenses file; use bower to manage third-party libraries (#246, #247)

• Automatically position drawing toolbar to not overlap other panels (#244)

• Channel min/max improvements (#243)

• Z/T sliders (#242)

• OMERO 5.3 support (#241)

• Viewing options updates (#240)

• Channel manager improvements (#239)

• Move ROI description to its own collapsible section with larger textarea (#236)

• Improve filter UI (#231)

• New freehand drawing tool (#226)

• Show filtered image map annotation count (#223)

• Image map annotation filtering (#222)

• Render minimap with channel settings (#219)

• Zoom to up to 3,200% (#214)

• Select ROIs by drawing rectangle (#212)

• Add image description to right panel (#210)

• Channel manager (#209)

• Add indicator when tiles are being loaded (#208)

• Improved color picker (#207)

• Channel improvements and new features (#193)

• Arbitrary zoom levels (#191)

• Allow drawing toolbar vertical/horizontal toggle (#187)

• Updated line and polyline/polygon drawing tools (#186)

• Filter ROIs by name (#184)

• Keyboard shortcut to select all ROIs (#181)

Bugfixes:

• Fix Omero 5.3 support (#266)

• Fix UI issues (#261, #265)

• Replace third party library (#256, #258)

• Update filtered channels when organizing them in groups (#255)

• Design issues (#254, #257, #263, #264)

• Reduce flickr/animation flash when overzooming on a rotated image (#250, #259)

• Fix ROI measurements while image is rotated (#249)

• Avoid ROI deselection after dragging edit marker (#245)

• Don’t treat enter key as mouse click (#234)

• Increase limits for tile retention (#233)

• Fix orphaned label issue (#232)

• Remove unneeded description row (#228)

• Reset variables after multi-drag, otherwise further dragging does not work (#227)

• Fix polygon markers after dragging (#225)

• Remove old layer when new layer gets removed before finishing loading (#221)

• Fix ROI map annotations (#218)

• Fix rotation issues (#216)

• Apply slight scaling to tiles to fill any sub-pixel gap between tiles (#213)

• Increase zoom animation threshold (#211)

• Disabled drawing buttons should not eat mouse events (#206)

• Numeric comparison of annotation positions (#205)

• Toggle visibility for all ROIs broken when filter is active (#204)

• Filter ROIs by text breaks when all ROIs are unnamed (#203)

• Fix third party library inclusion (#192)

1.1.3 (2017-06-21)

Features:

• Show formatted image description in right panel (#229)

Bugfixes:

• Fix ROI visibility toggle while filtered (#215)

1.1.2 (2017-02-21)

Bugfixes:

• Fix bug preventing color/intensity adjustments (#202)

1.1.1 (2017-02-10)

Features:

• Bundle docs with application (#183)

Bugfixes:

• Fix polygon points loader (#200)

• Fix ROI drawing mouse cursor (#199)

• Channels scrollbar whitespace (#198)

• Use better performing thumbnail URLs (#197)

• Add/remove metric from dropdown based on pixel size availability (#196)

• Fix color extraction from URL (#195)

• Fix grab/grabbing cursor when sorting map annotations (#194)

• Disable channel if min and max are equal (#190)

• Adjust margins for image title to keep it from running over buttons (#185)

1.1.0 (2016-11-07)

Features:

• Add 1.1.0 upgrade documentation (#177)

• Better error handling on image load (#158)

• Improve file size and loading time (#152)

• Help window (#147)

• Color picker improvements (#143)

• Additional resize handles for rectangle and ellipse shapes (#130)

• Undo and redo functionality (#120)

• Default shape properties (#118)

• Copy and paste shapes within and between windows (#109)

• Delete shapes using keyboard (#108, #111)

• Support drawing of squares and circles (#107, #137)

• Replace circle shapes with proper ellipses (#103)

• Select multiple shapes (#100)

• Show version number (#93)

Bugfixes:

• Fix image dragging (#178, #180)

• Fix duplicate library include (#165)

• Fix library loading order (#163)

• Fix permissions issue (#156)

• Hide tooltips when dragging/resizing (#154)

• Disable keyboard controls for minimap (#153)

• Optimize file size (#151)

• Fix shape selection after drawing ellipse (#150)

• Fix handling of shapes with transforms (#146)

• Fix annotation sorting (#142)

• Fix information panel content (#141)

• Fix UI while saving/loading (#138)

• Fix ROI selection (#139)

• Prefer slide name over description (#134)

• Fix shape color and transparency support (#131, #148, #174, #179)

• Fix scrollwheel zoom (#125)

• Fix shape count for slides (#124)

• Fix and improve dragging in edit mode (#123, #140)

• Fix shape label display while resizing shape (#117)

• Fix inline editing (#116)

• Fix unsaved changes warning in Firefox (#115)

• Fix read-only shapes (#113)

• Fix visibility toggle on filtered shapes (#112)

• Fix mouse cursor (#110, #114, #168)

• Fix duplicate loading of shapes (#106)

• Fix measurement display after updating measurements (#104)

• Fix rendering settings when switching slides (#98)

• Update minimap on rendering settings change (#97)

• Fix shape stroke weight (#96)

• Fix CSS (#95, #101, #102, #105, #126, #129, #132, #135, #136, #144, #145)

• Fix favicon (#94)

1.0.5 (2016-10-26)

Features:

• Add 1.0.4 upgrade documentation (#172)

• More thorough and redistributable install documentation (#167)

Bugfixes:

• Prefer slide name over description (#134)

1.0.4 (2016-05-19)

Features:

• Add support for OMERO 5.2.x and Django 1.7+ (#122)

1.0.3 (2016-02-16)

Bugfixes:

• Fix omero-marshal dependency (#91)

1.0.2 (2016-02-15)

Features:

• Save rendering settings (#83)

Bugfixes:

• Break long words in slide titles in left panel (#90)

• Support for additional shape types (#89)

• Fix pixel size in image marshaling code (#88)

• Load polygon/polyline points in Insight format as well (#87)

• Fix typo in installation instructions (#86)

• CSS cleanup (#81)

• Fix editable fields styling (#80)

• Fix line wrapping in ROI measurements (#79)

• Go full screen with the whole document to make colorpicker work (#78)

• Don’t mark ROI as modified when canceling inline label editing (#77)

• Set larger minimum height for right panel (#76)

• Include experimenter info for annotation owners (#75)

1.0.1 (2016-01-25)

Features:

• Install documentation (#85)

• Add basic metadata for Python package (#84)

• Install infrastructure for open source versions of OMERO (#82)

1.0.0 (2016-01-19)

Initial release.